This post may contain affiliate links. For more information, please see our affiliate policy.
Homemade Lemon Poppy Seed Muffins can play triple duty as a brunch menu addition, snack recipe, or spring dessert idea. Tangy yet sweet, this easy muffin recipe is one of my most popular muffin recipes ever.
Do you, too, crave all things citrus when spring and summer roll around? As proven by this Lemon Bundt Cake, fluffy Lemon Ricotta Pancakes, my recipe for Lemon Bars to beat all lemon bars, and this luscious Lemon Yogurt Cake that will make everyone swoon (and ask for another slice); my love for all things lemon is real.
As far as the classic combo of lemon flavor and poppy seeds, this easy muffin recipe right here is my all-time favorite, and is one of my best bakery-style muffin recipes ever according to fans as well.
These homemade Lemon Poppy Seed muffins are not too sweet, super moist, and dotted with just enough crunch texture to make things interesting. And can we have a moment of silence for the lemon glaze? It’s sweet-tart and delicious enough to drink by the spoon.
Once you see how doable it is to make Lemon Poppyseed Muffins from scratch (and in less than an hour!) you’ll never be tempted to buy muffin mix again.
Table of Contents
Recipe ingredients
At a Glance: Here is a quick snapshot of what ingredients are in this recipe.
Please see the recipe card below for specific quantities.
Ingredient notes
- Yogurt: In addition to a stick of melted butter and a couple eggs, plain yogurt (or Greek yogurt) is the key element to yielding a remarkably moist crumb. Sour cream works too.
- Lemon zest and juice: Zest the citrus for the muffin batter, then slice it open to juice for the glaze.
Step-by-step instructions
- Adjust oven rack to middle position and heat oven to 375 degrees. Line 2 12-cup muffin tins with paper liners and coat with nonstick spray. In a large bowl, whisk together the dry ingredients: flour, 1 cup sugar, poppy seeds, baking powder, baking soda, and salt.
- In a second small bowl, stir together the wet ingredients: yogurt, eggs, and lemon zest. Fold yogurt mixture into flour mixture with a rubber spatula until just combined. Carefully fold in melted butter.
- Using a greased 1/3-cup dry measuring cup, scoop batter evenly among prepared cupcake liners. Bake until the tops are golden brown and a toothpick inserted in the center of a muffin comes out clean with a few crumbs attached, about 25 to 30 minutes. Rotate muffin tin halfway through.
- Let muffins cool in muffin tin for 5 minutes, then turn out onto a wire rack and brush with glaze.
- In a small saucepan over medium heat, combine sugar and lemon juice. Cook until thickened and syrupy, about 3 minutes. Brush warm syrup on slightly cooled muffins.
- Cool 10 minutes before serving.
What is the best muffin pan?
When I bake my muffins, I always reach for my USA Pan 12-Cup Nonstick Muffin Pan. My muffins always come out easily and I like that it has a large overhang, so I can easily grip it with an oven mitt without squishing them. You can get it at Amazon for $29.95, and I also rounded up the best muffin pans if you’re looking for another option for your fluffiest muffins ever.
Recipe tips and variations
- Yield: This recipe makes 24 regular-sized muffins, ideal for a brunch buffet, a weekday breakfast with yogurt or eggs, in a basket as a food gift for a host, new parent, or neighbor, or even as a just-sweet-enough dessert.
- Storage: Store Lemon Poppy Seed Muffins at room temperature for 2 to 3 days.
- Freezer: Allow unglazed Lemon Poppy Seed Muffins to cool, then wrap in 2 layers of plastic wrap, and store in a freezer bag for up to 3 months. Thaw at room temperature for 12 to 24 hours, then glaze and enjoy.
- Glaze: For an alternative icing idea, make a simple Powdered Sugar Glaze for your muffins. In a medium bowl, add 2 cups powdered sugar and 1 teaspoon vanilla extract. Add water or milk (whole milk or regular milk, and start with 3 tablespoons) until you reach your desired consistency to drizzle. Almond milk works too.
- Chocolate Chip Muffins: Learn the secret to homemade Chocolate Chip Muffins that beat anything you can buy. These muffins are soft, tender, and not too sweet – just a perfect ratio of muffin-to-chocolate.
- Coffee Cake Muffins: These easy Coffee Cake Muffins are perfect for brunch, breakfast, or as a food gift. No need to fight over the biggest slice; all of these walnut-studded cinnamon muffins are equally-sized and over-the-top delicious.
- Morning Glory Muffins: This moist muffin recipe is packed with carrots, apples, pineapple, raisins, coconut, and walnuts.
- Pumpkin Muffins: Learn how to make Pumpkin Muffins from scratch, then discover how to turn this easy breakfast recipe into dessert!
- Strawberry Rhubarb Muffins: Celebrate spring withStrawberry Rhubarb Muffins. Crowned with a crumbly brown sugar-cinnamon streusel, this bakery-style muffin recipe might just make you fall in love with mornings again.
Frequently Asked Questions
This is likely due to one of two common baking mistakes. Either:
1. You overmixed the batter. Stop stirring when the muffin mixture is just combined; a few lumps are okay! Or,
2. You added too much flour. To measure flour accurately, spoon the flour out of the bag and directly into the measuring cup. Make a high mound on the top of the cup, then level off the measuring cup using the back of a knife.
I find that a thin coating is all you need to crown these homemade muffins with a hint of extra sweet-tart flavor, so I suggest using a pastry brush to spread on the glaze. Dunk the muffin tops straight into the bowl or drizzle it on thick with a spoon if you prefer more icing and don’t mind the possible drippy appearance.
No, you do not need to soak poppy seeds before baking. Poppy seeds contain insoluble fiber, and soaking can make these seeds easier to digest. From a baking perspective, though, soaking isn’t necessary.
More lemon desserts
Fruit Dessert Recipes
Blueberry Lemon Yogurt Cake
Cookie Recipes
Lemon Cookies
Cake Recipes
Lemon Cake with Limoncello Cream
Cake Recipes
Lemon Bundt Cake
Join Us
Lemon Poppy Seed Muffins
Ingredients
For the muffins:
- 3 cups all-purpose flour
- 1 cup granulated sugar
- 3 tablespoons poppy seeds
- 1 tablespoon baking powder
- 1/2 teaspoon baking soda
- 1/2 teaspoon Salt
- 1 1/2 cups plain yogurt (see note 1)
- 2 large eggs
- 1 tablespoon lemon zest (see note 2)
- 8 tablespoons unsalted butter melted and cooled
For the glaze:
- 1/4 cup granulated sugar
- 1/4 cup fresh lemon juice (from 2-3 lemons)
Instructions
To make the muffins:
- Adjust oven rack to middle position and heat oven to 375 degrees. Line 2 12-cup muffin tins with paper liners and coat with nonstick spray.
- In a large bowl, whisk together flour, 1 cup sugar, poppy seeds, baking powder, baking soda, and salt.
- In a second bowl, whisk together yogurt, eggs, and lemon zest. Fold yogurt mixture into flour mixture with a rubber spatula until just combined. Carefully fold in melted butter.
- Using a greased 1/3-cup dry measuring cup, divide batter evenly among prepared muffin cups. Bake until the tops are golden brown and a toothpick inserted in the center of a muffin comes out clean with a few crumbs attached, about 25 to 30 minutes. Rotate muffin tin halfway through.
- Let muffins cool in muffin tin for 5 minutes, then turn out onto a wire rack and brush with glaze (instructions follow).
To make the glaze:
- Meanwhile, in a small saucepan over medium heat, combine sugar and lemon juice. Cook until thickened and syrupy, about 3 minutes. Brush warm syrup on slightly cooled muffins. Cool 10 minutes before serving.
Recipe Video
Notes
- Plain yogurt: In addition to a stick of melted butter and a couple eggs, this is the key element to yielding a remarkably moist crumb.
- Lemon zest and juice: Zest the citrus for the muffin batter, then slice it open to juice for the glaze.
- Yield: This recipe makes 24 regular-sized muffins, ideal for a brunch buffet, a weekday breakfast with yogurt or eggs, in a basket as a food gift for a host, new parent, or neighbor, or even as a just-sweet-enough dessert.
- Storage: Store Lemon Poppy Seed Muffins at room temperature for 2 to 3 days.
Nutrition
Meggan Hill is a classically-trained chef and professional writer. Her meticulously-tested recipes and detailed tutorials bring confidence and success to home cooks everywhere. Meggan has been featured on NPR, HuffPost, FoxNews, LA Times, and more.
could i use favored yougurt
Yes! Definitely, it will just change the flavor a little to your flavor of yogurt.
Love your recipes. Your muffins are the best ever! I would love to know how you created your muffin liners.
Hi Bonnie, thank you so much for your question! The liners can be made with 5-inch squares of parchment that are molded around a small jar that fits in the muffin pan, or they can be purchased already folded. (Locally they are available at Walmart or online at Amazon.) Take care! – Meggan
Thank you for this delicious recipe! It was so yummy! What do you recommend for storing them?
Hi Shante, you’re welcome! I recommend making sure they are cooled completely, then storing them in a plastic bag at room temperature for 1 week. You could also freeze them for up to 3 months in a double layer of zipper-top freezer bags OR in plastic wrap and aluminum foil plus a zipper-top freezer bag. You can defrost them at room temperature for 20 to 30 minutes before serving. I hope this is helpful! Thanks. -Meggan
Hi there
I would love the poppy seed cup cakes recipe in metrics please. Weird how it’s the only one I can’t convert to metrics as the others do have the option at the bottom of the recipes, which makes my life much easier. Love your work, keep sharing..xx
Hey there, there seems to be an issue on my site where the metric conversion is no longer showing up on ANY of the recipes! Thank you so much for finding this and pointing it out to me. I’m going to reach out to my tech team and find out what’s going on, and I’ll email you a metric version of the muffins as soon as it’s all fixed. Sorry about that! Thanks! 🙂 -Meggan